# or ^ denotes authors contribute equally, * denotes (co-)corresponding author and _ _ denotes a lab member. An up-to-date list of all publications is available on Google Scholar.
A noncoding regulatory variant in IKZF1 increases acute lymphoblastic leukemia risk in Hispanic/Latino children.
Smith, A.#*,Wahlster, L.#, Jeon, S.#, Kachuri, L., …, Xia, G., …, Yu, F.^, Chiang, C.^, V., G.*^. Cell Genomics
Deciphering cell states and genealogies of human hematopoiesis.
Weng, C., Yu, F., Yang, D., Poeschla,, M., …, Sankaran, V., G.*. Nature
Systematic investigation of mitochondrial transfer between cancer cells and T cells at single-cell resolution.
Zhang, H., Yu, X., Ye, J., Li, H., Hu, J., Tan, H., Fang, Y., Akbay, E., Yu, F., …, Bo Li* Cancer Cell
A genetic disorder reveals a hematopoietic stem cell regulatory network co-opted in leukemia.
Voit, R.#, Tao, L.#, Yu, F.#, Cato, L., Cohen, B., Liao, X., Claudia, F., Nandakumar, S., Wahlster, L., Kristian, T., Regev, A.*, and Sankaran, V., G.* Nature Immunology
[Github], [Data], [Highlight by Boston Children’s Hospital], [Highlight by BioArt]
Variant to function mapping at single-cell resolution through network propagation.
Yu, F., Cato L., D., Weng, C., Liggett L., A., Jeon, S., Xu, K., Chiang, C., Wiemels J., L., Weissman J., S., , Smith A. J., and Sankaran V., G.* Nature Biotechnology
[Github], [Highlight by Nature Genetics], [Highlight by New York Stem Cell Foundation], [Highlight by Broad Institute], [Highlight by NHGRI CEGS center], [Highlight by Single Cell Genomics Day], [Highlight by Turingene], [Highlight by BioArt]
A pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis.
Yu, F., Sankaran V., G., and Yuan G., C.* Bioinformatics
[Github]
scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures.
Zhang, Y#., Zhang, Y#., Hu, J.#, Zhang, J., Guo, F., Zhou, M., Zhang, G.*, Yu, F.*, and Su, J.* Bioinformatics
[Website]
CFEA: a cell-free epigenome atlas in human diseases.
Yu, F.#, Li, K.#, Li, S.#, Liu, J., Zhang, Y., Zhou, M., Zhao, H., Chen, H., Wu, N., Liu, Z.*, and Su, J.* Nucleic acids research
[Website]
Breast cancer prognosis signature: linking risk stratification to disease subtypes.
Yu, F.#, Quan, F.#, Xu, J.#, Zhang, Y.#, Xie, Y., Zhang, J., Lan, Y., Yuan, H., Zhang, H., Cheng, S.*, Xiao, Y.*, and Li, X.* Briefings in bioinformatics
Systematic Characterization of Circular RNA-Associated CeRNA Network Identified Novel circRNA Biomarkers in Alzheimer’s Disease.
Zhang, Y.#, Yu, F.#, Bao, S., and & Sun, J.* Frontiers in bioengineering and biotechnology
LnChrom: a resource of experimentally validated lncRNA-chromatin interactions in human and mouse.
Yu, F.#, Zhang, G.#, Shi, A.#, Hu, J., Li, F., Zhang, X., Zhang, Y., Huang, J., Xiao, Y.*, Li, X.*, and & Cheng, S.* Database
MeSiC: A Model-Based Method for Estimating 5 mC Levels at Single-CpG Resolution from MeDIP-seq.
Xiao, Y.#, Yu, F.#, Pang, L.#, Zhao, H., Liu, L., Zhang, G., Liu, T., Zhang, H., Fan, H., Zhang, Y., Pang, B., and & Li, X.* Scientific reports
# denotes co-first author and * denotes (co-)corresponding author.