Resources

Tool:

• HemeMap (Nature Immunology, 2022): A computational framework to identify putative cisREs and cell-type-specific cisRE-gene interactions by integrating multiomic data from 18 hematopoietic cell populations.
• SCAVENGE (Nature Biotechnology, 2022): An R package for dentifying genetic trait/phenotype relevant cell type/state at single cell resolution.
• CUT&RUNTools 2.0 (Bioinformatics, 2021): A tool for bulk and single-cell CUT&RUN/CUT&Tag data processing and analysis.

Database:

• CFEA (Nucleic Acids Research, 2020): A cell-free epigenome database dedicated to three types of widely adopted epigenetic modifications involved in 27 human diseases.